MHCflurry documentationΒΆ
- Introduction and setup
- Command-line tutorial
- Python library tutorial
- Command-line reference
- mhcflurry-predict
- mhcflurry-predict-scan
- mhcflurry-downloads
- mhcflurry-class1-train-allele-specific-models
- mhcflurry-class1-select-allele-specific-models
- mhcflurry-class1-train-pan-allele-models
- mhcflurry-class1-select-pan-allele-models
- mhcflurry-class1-train-processing-models
- mhcflurry-class1-select-processing-models
- mhcflurry-class1-train-presentation-models
- API Documentation
- Submodules
- mhcflurry.allele_encoding module
- mhcflurry.amino_acid module
- mhcflurry.calibrate_percentile_ranks_command module
- mhcflurry.class1_affinity_predictor module
- mhcflurry.class1_neural_network module
- mhcflurry.class1_presentation_predictor module
- mhcflurry.class1_processing_neural_network module
- mhcflurry.class1_processing_predictor module
- mhcflurry.cluster_parallelism module
- mhcflurry.common module
- mhcflurry.custom_loss module
- mhcflurry.data_dependent_weights_initialization module
- mhcflurry.downloads module
- mhcflurry.downloads_command module
- mhcflurry.encodable_sequences module
- mhcflurry.ensemble_centrality module
- mhcflurry.fasta module
- mhcflurry.flanking_encoding module
- mhcflurry.hyperparameters module
- mhcflurry.local_parallelism module
- mhcflurry.percent_rank_transform module
- mhcflurry.predict_command module
- mhcflurry.predict_scan_command module
- mhcflurry.random_negative_peptides module
- mhcflurry.regression_target module
- mhcflurry.scoring module
- mhcflurry.select_allele_specific_models_command module
- mhcflurry.select_pan_allele_models_command module
- mhcflurry.select_processing_models_command module
- mhcflurry.testing_utils module
- mhcflurry.train_allele_specific_models_command module
- mhcflurry.train_pan_allele_models_command module
- mhcflurry.train_presentation_models_command module
- mhcflurry.train_processing_models_command module
- mhcflurry.version module